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All published Bionoia articles. Filter by topic, evidence tier, study type, or tag.

Topic
Autophagy & cellular renewal 16Chronic inflammation 5Microbiome ecology 21Mitochondrial biology 22Mucosa 55Resolution biology 4Sleep biology 18Stress biology 15
Evidence tier
Evidence 3Hypothesis 65Speculation 30
Study type
Human observational 1Mixed 2Animal 1Mechanism review 17
Tags
mechanism 19barrier 17microbiome 14inflammation 14marker 14intervention 6supplement 6technique 3resolution 2ernæring 2omega-3 2goblet cells 2dysbiosis 2sepsis 2eicosanoids 1
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14 articles of 156

Microbiota-derived butyrate inhibits colonic epithelial pyroptosis and mitigates DSS-induced colitis via interacting with aryl hydrocarbon receptor
Speculation
Mucosa · Discovery · animal
**Source:** [pubmed](https://pubmed.ncbi.nlm.nih.gov/42177552/) **Authors:** Zou F, Wu Z, Wang S, Xu M, Xia P **Venue:** J Transl Med · 2026 May 23 **AI relevance (5/5):** Dire…
Resolution as an active process
Hypothesis
Resolution biology · Framework · mechanism_review
**Summary** For decades inflammation was understood as a single process that simply "wore off" once the trigger was removed. Resolution was passive — what happened when nothing mo…
Specialized pro-resolving mediators (SPMs)
Hypothesis
Resolution biology · Mediators · mechanism_review
**Summary** SPMs are bioactive lipid metabolites derived from polyunsaturated fatty acids. They include four families: lipoxins (from arachidonic acid), E-series resolvins (from E…
The omega-3 index as biomarker
Evidence
Resolution biology · Markers · mechanism_review
**Summary** The omega-3 index measures EPA + DHA as a percentage of total fatty acids in red blood cell phospholipids. It is the standardized, clinically-validated proxy for tissu…
MUC2 glycosylation — the structural key
Hypothesis
Mucosa · Architecture · mechanism_review
**Summary** MUC2 — the dominant secreted mucin in the colon — is not protein with sugar attached. It is, by weight, mostly sugar. Up to eighty percent of the molecule's mass is it…
Resolution biology — SPMs (resolvins, protectins, maresins)
Hypothesis
Mucosa · Adjacent systems · mechanism_review
**Summary** Conceptually one of the most important paradigm shifts in inflammation research in the past 15 years, led by Charles Serhan at Harvard. Resolution of inflammation is n…
The sepsis-permeability feedback loop
Hypothesis
Mucosa · Mechanisms of dysfunction · mechanism_review
"Leaky gut → sepsis" is not a one-way mechanism. It is a self-reinforcing cycle. Both leaky gut (barrier defect at intestinal surface) and gut dysbiosis are intrinsic to sepsis. W…
Akkermansia muciniphila and the mucolytic balance
Hypothesis
Mucosa · Microbiome interface · mechanism_review
Akkermansia muciniphila colonizes the mucosal layer of the human gut. It is particularly effective at increasing mucus thickness and improving barrier function. A. muciniphila rest…
Paneth cells and α-defensins (HD5, HD6)
Hypothesis
Mucosa · Architecture · mechanism_review
The small intestine has its own specialized defense system: Paneth cells at the bottom of the crypts of Lieberkühn, which produce potent antimicrobial peptides — particularly HD5 a…
Mast cells and mucus hypersecretion (MCAS)
Hypothesis
Mucosa · Adjacent systems · human_observational
Mast cell activation syndrome (MCAS) is a differential consideration in any picture combining inflammation escalation, mucus hypersecretion, and food intolerance patterns. Mast ce…
The vagus nerve and the cholinergic anti-inflammatory pathway
Hypothesis
Mucosa · Adjacent systems · mixed
The vagus nerve has anti-inflammatory properties through its afferents (activating HPA) and its efferents (the cholinergic anti-inflammatory pathway, CAP). The CAP inhibits pro-inf…
The glycocalyx and heparan sulfate / syndecan-1
Hypothesis
Mucosa · Architecture · mechanism_review
A third barrier system, often overlooked in clinical discussion: the glycocalyx layer on the basolateral side of enterocytes, primarily based on heparan sulfate proteoglycans (espe…
Dietary emulsifiers and mucus barrier damage
Hypothesis
Mucosa · Interventions · mixed
Specific food additives have surprisingly strong evidence for mucus barrier damage. Consumption of generally-regarded-as-safe emulsifiers has increased, and is associated with inc…
The integrated mechanistic model
Speculation
Mucosa · Synthesis · mechanism_review
When all of this is integrated, a pattern emerges that may match many escalating mucosal-disease pictures. **The primary lesion (hypothesis):** defective mucin glycosylation — eit…